{ "pfam": { "note": "Pfam/HMMER not configured: missing Pfam HMM DB (set PFAM_DB to a pressed Pfam-A.hmm).", "count": 0, "items": [], "method": "unavailable" }, "trna": { "note": "", "count": 1, "items": [ { "id": "trna.1", "end": 9522, "note": "", "score": null, "start": 9448, "method": "Aragorn", "strand": "+", "isotype": "Leu", "anticodon": "GAG" } ], "method": "Aragorn" }, "input": "/app/data/local/uploads/d560dbbd-acdc-4e81-aff8-4370f8bab3b3/KillerTomato.fasta", "blastp": { "note": "BLASTp not configured: set BLASTP_DB to a local protein DB, or PHAGEFLOW_REMOTE_BLAST=1 to use NCBI remote BLAST.", "count": 0, "items": [], "method": "unavailable" }, "header": "Microbacterium phage KillerTomato complete sequence, 17442 bp including 9-base 3' overhang (CCCGCCCCA), Cluster EE", "target": "phage", "pipeline": { "stage": "evidence", "stages_run": [ "baseline", "evidence" ], "evidence_complete": true }, "proteins": { "count": 160, "items": [ { "orf_id": "+2.25", "sequence": "MAFSPDQSQKYLRMSDTTTTDAEPFELDANSTWIEAVELFQKEGAEWLTAADAPQLMALRSIAKQLDGGTFQAALISQFTLIHRALLNRRPGEPQQPTDGAGAARQAAMGPSLFEQLGGVWTADA", "length_aa": 125 }, { "orf_id": "-3.84", "sequence": "MNQGELRDQGGLEGAAVELLRDRAQRHELRRVSGRQPLGPLLLEQLDSFDPGRIGVQLERFGVGGGGIAHSQIFLTLIW", "length_aa": 79 }, { "orf_id": "-1.23", "sequence": "MNCEIRAAWKVPPSSCFAIERSAMSCGASAAVSHSAPSFWNSSTASIQVELASSSNGSASVVVVSLILKYF", "length_aa": 71 }, { "orf_id": "-2.51", "sequence": "MQRAGADSSRSICSTCRRISAGSSGALMRRPSTRRPAARTATAPWLPAELRRPHRSAAAARQAGGSAAPGESG", "length_aa": 73 }, { "orf_id": "-1.22", "sequence": "MQADLSRQLGGAHASAVHTPPSCSNSDGPMAACRAAPAPSVGCCGSPGRRFSSAR", "length_aa": 55 }, { "orf_id": "+3.57", "sequence": "MGPAQLGRQPWGRRCSSSWAACGRPTHERPRAAG", "length_aa": 34 }, { "orf_id": "+1.1", "sequence": "MDGRRMSAPELPAEIRLHVEQIERELSAPARCTCPSGDGSLRWPCPEHPPAEARAAYVEAWEDLQPEPGSLAAAAAELQRALDELHAALFGWMLPAMVAFADTVERLADAWHDSRPVRWLNRRARRAAMRRHPAGSQLGVVTVDVSLDMSKFVAALDALPSAEQLARRAGIRLPELPPARIYTPPAALSWVDVDRLAERAGRDLGTFDAILAAPTPAEIPPAPLCQPVNAGQHVGRVRRHTWRELLQLPGDTA", "length_aa": 253 }, { "orf_id": "-1.21", "sequence": "MVRSRGTAVSWTCLGRVPRQLQQLAPGVPANAADVLAGVDRLAERGGRDLGRRRGCQDRVERAEIPAGALCQPVNVNPRQRSRRRVDPRRRQLGQADAGAARQLLGRGQRVERGHELGHVQGHVNCHDAELRAGGMPAHGGATRSTVQPAHRPAVVPGVSQALDGIRERDHGRQHPAEQRSVQLIERALQLGSCSCQAARLGLQILPRLDVGGARLGRRMLGAGPAQRAVAARARAARRR", "length_aa": 240 }, { "orf_id": "+3.58", "sequence": "MPERRRLAALALPRASAGRGARRLRRGVGGSAARAWQPGSCSCRAAARAR", "length_aa": 50 }, { "orf_id": "-2.50", "sequence": "MPARRASCSAEGSASSAATNLDMSRDTSTVTTPSCEPAGCRRMAARRARRFSQRTGRLSCQASARRSTVSANATMAGSIQPNSAACSSSSARCSSAAAAARLPGSGCRSSHAST", "length_aa": 114 }, { "orf_id": "+2.26", "sequence": "MSCTLRCSAGCCRPWSRSRIPSSAWLTPGTTAGRCAG", "length_aa": 37 }, { "orf_id": "+2.27", "sequence": "MTCPWTCPSSWPRSTRCPRPSSWRAAPASACPSCRRRGSTRRRLRCRGLTLTGWQSAPAGISARSTRSWQPRRRPRSRPPRSASRSTPASTSAAFAGTPGASCCSCRGTRPRHVHDTAVPRDRTMAPEALDAAPQRRFPERVRRLPRSVPADLVRGVRLRARSVARAGRAPRARAVPGRPPSSRSAPVETGCDQSRPAERQDRDSRSYRAVRAADESRPQRRGDRIERRAGPPGLQAHHARDQGYAEARAALPGAHRDPRHSDEGRRAVRDQGREVGGAAGHPDRRRPGR", "length_aa": 290 }, { "orf_id": "-2.49", "sequence": "MSPGSCSSSRQVCRRTRPTCWPALTGWQSGAGGISAGVGAARIASNVPRSRPARSASRSTSTHDSAAGGV", "length_aa": 70 }, { "orf_id": "-2.48", "sequence": "MAHGLLLPRFERVAERREPDQPEQIAVAVERAREIVAEGRRPAPRGPWCDLGVRLCHGHV", "length_aa": 60 }, { "orf_id": "+3.59", "sequence": "MSMTQPYPEIAPWPPRRWTPPLSDDFPSAFDGYRDLFRLIWFAAFGYALEAWQEQAVRHVLELYPAGHRRAGQLRWRQVVISLGRQNGKTEIAAAIGLFALLMKAAPNVVGIASSAEQARLVYKRTMRAIRGTPKLAQRFRALTETRGIQTKDGGQYEIKAAKSAALQGIPIDAGLVDELHILARALWFDLVNGMGGRPNCFVVGITTAGDENSELLLHLYEQGSEAIDAGADARFGFYVWEADAAEIPDDDDELGRELARANPSVASGRVDLENALIEVRSMPKSDAIRYRLNRFVQSVSEFITAAMWHDNFVREDWPEGVAPIFTIDRTPDWSAATISAFGKRPDGRIYCDVVASIVRPDLARLVELCEQLNAAHRPATFGMDSFTLRDLGRELDLRGIPTTMAGIADVMNGSALFYAKLQQQRLAHPGHDLLAHQIPLTKRKDSDGGFKISRQASSASIDGVMSHVIGVQLAENHRDNALQMF", "length_aa": 486 }, { "orf_id": "-2.47", "sequence": "MQQQLAVLVAGGRDPDDETVRPAAHTVDQIEPERARENVQLIDQAGVDRDALQRRRLRGLDLVLPAVLRLNASGLGERPEALRELRRTPDRAHGALVDQAGLLGARCDPHDVGGGFHQQREQPDSCGYLGLAVLPAETDHNLSPPELTGSTVAGRVQL", "length_aa": 158 }, { "orf_id": "-3.83", "sequence": "MGAAFISSANSPIAAAISVLPFCRPRLITTCLHRS", "length_aa": 35 }, { "orf_id": "-3.82", "sequence": "MIPTTKQLGRPPIPLTRSNQSARARMCSSSTRPASIGMPCSAADFAALISYCPPSFV", "length_aa": 57 }, { "orf_id": "+1.2", "sequence": "MSCTFSRARSGSIWSTVWAAGLTVSSSGSRPPATRTASCCCTCTSRDLRRSTPARMPGSGSTCGRPTRPRSPTTTTS", "length_aa": 77 }, { "orf_id": "-1.20", "sequence": "MPRTDWRGPARGLARRRRRGSRPRRPPTRRTRTGHPRRRRSPQIPARTGAAAARCSRRRRS", "length_aa": 61 }, { "orf_id": "-3.81", "sequence": "MDRTSIRAFSRSTRPDATDGLARASSRPSSSSSSGISAASASHT", "length_aa": 44 }, { "orf_id": "+2.28", "sequence": "MGGRRGRDPRRRRRARPRAGPRQSVRGIRPRGPRERSDRGSIHAEVGRDPLPAEQVRAVGL", "length_aa": 61 }, { "orf_id": "-2.46", "sequence": "MILGQLHADNVRHNAVDRRAGRLPADLEPAVTVFPLRERDLVGEQIVAGVRQALLLQLRVEQRAAVHHVGYAGHGRGDAAQIQLAAEVAQREAVHAERGRPVRSVQLLAQLDQAREIRAHDRRHHVAVDPAVRALTERRDRGSRPVGRSVDREDRRDALGPVLAHEIVVPHGCGDELRDRLHEPVQPVADRVRLRHGSNLDQSVL", "length_aa": 205 }, { "orf_id": "-3.80", "sequence": "MAADQSGVRSIVKIGATPSGQSSRTKLSCHMAAVMNSETDCTNLFSR", "length_aa": 47 }, { "orf_id": "+2.29", "sequence": "MARQFRARGLARGRRAYLHDRPNARLVGCHDLGVR", "length_aa": 35 }, { "orf_id": "-3.79", "sequence": "MPAMVVGMPRRSSSRPRSRSVKLSMPNVAGRCAAFSCSHSSTRRARSGRTIDATTSQ", "length_aa": 57 }, { "orf_id": "+2.30", "sequence": "MRAAERCAPAGHVRHGQLHAARPRPRAGSARHPHDHGRHSRRDERQRAVLREAAAAAPGAPRPRSARPPDPAHEAERQ", "length_aa": 78 }, { "orf_id": "-3.78", "sequence": "MNPPSLSFRFVSGIWWASRSWPGCARRCCCSFA", "length_aa": 33 }, { "orf_id": "+1.3", "sequence": "MTAGSRSAGRRPARRSTALCRTLSACSWPRITATTRCRCSRTRGHD", "length_aa": 46 }, { "orf_id": "-1.19", "sequence": "MLLGHGGRVTRDVLIRLQHAGGHAAVVQPGSRVVAGGDRAAQIRLRSLHGAETVGRAGNAQQRDVHHVARLQLAVAVAVLRHAAGGIRVNADLQGVEHRQSDRLPERVAHDLGVTVAGAGHGHHNLLDPAAARALRVRPAGQGVILDHAAVARGLDAQLLGADRVDLDSPIDHRDPERVGHGHGPESGRPARRCHAGCRVVAARASATAGQPLSDASHVKNGYPADHMGGNSDARPLSRHR", "length_aa": 241 }, { "orf_id": "+3.60", "sequence": "MIMAARPNYRPCGQLGNHSSRGTHPRVAGRQ", "length_aa": 31 }, { "orf_id": "+1.4", "sequence": "MVSWVTILHVGRIREWLAGSSRSASSDNPTPGVTAPSRSAALGTVTVADAFGISMVYRAIQIHAISAKQLSIETTRYGRVVEDHPLTRRPDPQSTRSSWIEQVVVSMASTGNGYAEIVRDAFGQPIALPVLNPLQVRIHTDAAGRVTKYSYRNRELQPRDMMHVTLLRVPGSAYGLGPVQAAQPDLRGAISTRDYAAAWLDDSGVPTGVLKSDQNITRDTAAMAKEHWNENAGQKNGVVVLGQGLDYRPIFLSPKDVQFIESQQFSVTQIARLFGTPASLMLAAVEGNSQSYSNVEQDWLAYVRFTLMGYLTEIEDALSELLPGARRARFNIEALLRADTTTRYASYKTAIDAGFLTVPEVREIEGWAPLPDDAETPSQEKPTA", "length_aa": 384 }, { "orf_id": "+2.31", "sequence": "MWCPWPAPATVTPRSCATRSGSLSLCRCSTPCRSAFTRMPPAA", "length_aa": 43 }, { "orf_id": "+2.32", "sequence": "MTRPPWPRSTGTRTPARKTASWCSGRVSTIGRSSSAPKMCSSSSRSSSA", "length_aa": 49 }, { "orf_id": "-2.45", "sequence": "MPSTAASMSDAGVPNRRAICVTLNCCDSMNCTSLGLRKIGR", "length_aa": 41 }, { "orf_id": "-2.44", "sequence": "MVSARSRASMLNRARRAPGSSSDRASSISVR", "length_aa": 31 }, { "orf_id": "+2.33", "sequence": "MPCRSCCPVRVAPGSTSRLCCAPTPRRATRATRRPLMPAS", "length_aa": 40 }, { "orf_id": "-3.77", "sequence": "MTAARTCSSRVLISVMRSASPGSGSRRRRAAVPIPRSRGPRARSGSRHQWPSCSSRSASWCRRAAEPRC", "length_aa": 69 }, { "orf_id": "-2.43", "sequence": "MALVEQLAAGLDDRARADLGRHGRSGADQLADESQSLRRARFHERVIDGHVARFGRHVGAQLLSELLQLGLLCALVGHVLLAVLDAGRQGRDDGDDSGRDLGRVRAVVVHAELLRQVDDVLVCQLDHGAVVLTDRLAVDERGTIGCALQVEPNRDAGEIAAEGLRVDPAHGVVTGAADDHQRAVGAVLQARQLLEPVLTGHQRVERQAEVSEPFRAVDDRAQPVDPVGRIRDDGHAVGIGSVRGHQVGVVLAQHGSLATAGAQREGAQVEVEHVHVGGALDLLPRQLDVTAVGLDLLVLGAEGDRTRGEVVALVDLLVHVHVVGLQHAVFELQTLGRQHAGAEDRAEHVRRFDQADGVAHVLRGQDAVSRGAAGERAFHHALVLADRVGVAAHQVAQPRAGAALVGHRLGSAVLASQGHLPAEILHLLADLAQVVAALLGLVLGHVGVVLSTGVVGALTHALDARGRVGREGDQGDLTDGHAVVHDHVAEVVALDVVFDGVEPDRETIQHAVAGELIRLVAARRGADLRRGVPAALVVLRGRHNADRLAVAVEQLRALGLDAAGVQPLALAPHGDGLAVGHAHAADLAGLGVDGCAHVQLAGLDLGHAVGFSWLGVSASSGSGAHPSISRTSGTVRKPASMAVL", "length_aa": 644 }, { "orf_id": "+3.61", "sequence": "MGTAARRRRDPEPGEADRMTEIKTRELHVRAAVNAETREISGVGVPYGETITVWGQRERLNAGSVEAEGAKLFYRHSEPIGIVTAAKDDESGWHPTAKISATARGDEAYQLARDGVLDGLSIGFDPIEYHIERDDLGDVIVYDRVAVREVSLVPFPAYPSARVESVRERPNNPRREDNPNMPENETQERGDDLREIREQVQDLGRQVALAGQYRAAEPVTDERSAGAWLRDLVRGDADTIREYEGMVERAFAGGTSADGILTPQYVGDTIRLIEAPNVLGSIFSTGVLPSKGLKLEYGVLKTDDVDVDEQINEGDDLTTGSITLGTEYEEIKTYGGYIELSRQKIERTTNVNVLDLHLRALALRAGRRKAAVLRKHYADLVAANAADPDRVAVVADATDWIDWLGAIIDGAEWFADLGLSLDALVAGKDRFKELASLKDSANRPLMVVSGTGDNTVGRINAKTLGGDLAGVTVRLDLKGAADRAAFVNGEAIRQYNSPVVELADENIVNLSKQFGVYYYGANATEIPAAVVPVVAALPAGVKDGK", "length_aa": 545 }, { "orf_id": "+2.34", "sequence": "MGPARAAERRQRRGRGREAVLPPQRADRHCDGREGRRERLAPHGEDQRHGARRRGVSARPRRRAGWSLDRVRPHRIPHRARRPRRRDRVRPRGRP", "length_aa": 95 }, { "orf_id": "+1.5", "sequence": "MRSPWSPSLPTRPRASRACVSAPTTPVERTTPTCPRTRPRSAATTCARSASRCRISAGRWPWLASTALPSR", "length_aa": 71 }, { "orf_id": "-3.76", "sequence": "MISSYSVPRVIEPVVRSSPSLICSSTSTSSVFSTPYSSFRPLDGSTPVLKIEPSTFGASIRRMVSPTYCGVRMPSAEVPPANARSTMPSYSRIVSASPRTRSRSHAPALRSSVTGSAARYWPARATCRPRSCTCSRISRRSSPRSWVSFSGMLGLSSRRGLLGRSRTLSTRADG", "length_aa": 174 }, { "orf_id": "+2.35", "sequence": "MAARPGARRRRHDPRVRGHGGTRVRRRHLG", "length_aa": 30 }, { "orf_id": "-3.75", "sequence": "MRSTAALRRPARSARARRWRSSTFTLVVRSIFCRDSSM", "length_aa": 38 }, { "orf_id": "-3.74", "sequence": "MTNAARSAAPFRSSRTVTPARSPPRVFALIRPTVLSPVPLTTISGRLALSFRLASSLNRSLPATSASSDRPRSANHSAPSMIAPSQSIQSVASATTATRSGSAAFAATRSA", "length_aa": 111 }, { "orf_id": "+1.6", "sequence": "MRPTGSTGWARSSTARNGSLTSACRSTRWWPVRTGSRSWRA", "length_aa": 41 }, { "orf_id": "+1.7", "sequence": "MPRSSTARRSVSTTAPWSSWQTRTSSTCRSSSACTTTARTRPRSRPLSSPSSRPCRPASRTASKTWPTRAQSRPSCSSSLSSCAPT", "length_aa": 86 }, { "orf_id": "-3.73", "sequence": "MLSSAMSYLPSLTPAGRAATTGTTAAGISVAFAP", "length_aa": 34 }, { "orf_id": "+3.62", "sequence": "MADESTEQTELQQLAEQLRAYVTPEARHVAVDDAFVKACASEALALVGQLIGTTTTVPAEIRTRAIIEAGSELFHKRQAPNGISQFADATGTPLRVAKDPMNVARVILQPFLPLGFA", "length_aa": 117 }, { "orf_id": "-3.72", "sequence": "MSGECHAAGGDAQGGGQYLGPVQVLDLGALDPLDQPAGAQQPALHGLDPLIQLIGLVGVHARLRQQHDAEPHDRAAERLICLDVGRAGHDERGRQLHARRHVVVGRQLDRRAGHVVGQLAAQIPEHAHANPSGRKGCRMTRATFMGSLATRSGVPVASANCEIPLGAWRLWNSSLPASMIARVRISAGTVVVVPISWPTRARASDAHAFTNASSTATWRASGVT", "length_aa": 224 }, { "orf_id": "+2.36", "sequence": "MRVGGSGSRRPADRHHYDRAGRDPHARDHRGRQRAVPQAPSA", "length_aa": 42 }, { "orf_id": "+2.37", "sequence": "MSVLGDLRRELADDVAGAPVELTTYDHVPARVQLPAAFVMAGAPYVEADQTFGSSIVRFGVVLLTQPSMNADETDQLDERIETVQRRLLSAGWLVERIERPEIQDLNGAEVLATALSVAAGGVTFP", "length_aa": 126 }, { "orf_id": "-2.42", "sequence": "MTTSASASSFSIVQLITSAERSTPGPPSVSCGLRLPRIRVLPMGVSLSWVDCLGHVRGMSRRRRRRSGRWPVPRPRSGLGSRGARSARPASRRSAAGAARSRSAHPADRSRRRSCSAASAARRRTARSSCRTSDLPRRRARRP", "length_aa": 143 }, { "orf_id": "-1.18", "sequence": "MVVSMWVPFLELVLTHQLVDAGLQLADQLGLGTAQRVHQERLRTAARVGVAVVDDAGVCATLGVAGAHHGFGAASAGAQRAGQLAALGRHARVGYDDRAEPEHEIREVGRLVAGGAQLRVQLSQPVDADAAVLVLGHAPPRLRAGVHGRLAVDRELVIERERRLGIGGRLAADGRLGADRQRADEVRFGLGRHSVAVRRDRVGHVLFAAVLPHVAPERCRVGGLDRGPAQVELPAPALGRVLERDHIGVGLLVLDRPADHVGRTVNAGAAERQLRLAVATDTGTAHGGLSLLGGLSRTCQGNVTPPAATLRAVASTSAPFRSWISGRSIRSTSQPALSSRRCTVSIRSSS", "length_aa": 350 }, { "orf_id": "+1.8", "sequence": "MGSTRIRGNRKPQLTLGGPGVDRSADVISWTIENEEADADVVTFEDAAEGGGRQFYLRGSAIQSTDTAAFWRYVWENSGEENVPYTIAPHGNAVPSETEPHFVGTLTIGPKPTIGGEASTDPKSAFTFDYEFAIDGEPTMDTGA", "length_aa": 144 }, { "orf_id": "+2.38", "sequence": "MWSRSRTRPRAGAGSSTCAGPRSSPPTRQRSGATCGRTAAKRTCPTRSRRTATLCRPRPNRTSSAR", "length_aa": 66 }, { "orf_id": "+3.63", "sequence": "MGEQRRRERALHDRAARQRCAVRDRTALRRHADDRPQADHRRRGVHRSQVGVHVRLRVRDRRRADHGHRRVSGAARGRVPEPRHPHRRAARAEREAARRRRRVGRPPGSHVPARLDRHSQRARAGQERRAGRHAARRPRPHQSRGARRLRQAWRTRRRRPLRQPPHGQPCAAVPGGRAAPCPIPAGQRAADRHRPTDA", "length_aa": 198 }, { "orf_id": "-2.41", "sequence": "MNADLGSVDASPPMVGLGPIVSVPTKCGSVSDGTALPCGAIV", "length_aa": 42 }, { "orf_id": "-2.40", "sequence": "MVRPRPARSVPASSPLLAGTRALAMTIEPSRNMRSGRSADSSPAARSFAFSSRSPSMRMPRFWYSATRRPAYAPVSMVGSPSIANS", "length_aa": 86 }, { "orf_id": "+1.9", "sequence": "MAEYQNRGIRIDGLRELNAKLRAAGDESADLPDLMFRLGSIVIANARVPAKSGELAGTLRAGRGRTKAVVRAGYAKRGAHAGVVHYGNPHTGSRAQPFLVDALRRAQSQLVSELQTGIDQLMRKHKL", "length_aa": 127 }, { "orf_id": "-3.71", "sequence": "MRHAWRSRRAPRLWCGLGRRAACRPARRSWPARARWL", "length_aa": 37 }, { "orf_id": "+2.39", "sequence": "MAHTPASSTTATPTRAAVRSRSWWTRCAVPNPSWSASCRPASTN", "length_aa": 44 }, { "orf_id": "-2.39", "sequence": "MCLRISWSMPVCSSLTSWDWARRSASTRNGCARLPVWGLP", "length_aa": 40 }, { "orf_id": "+2.40", "sequence": "METTKKKFDLDQLTLGEVAAIEDLSGVAIGSVSESTPQGKFLAALYMVAKRRDGQPTFTFNAALQASMSEAQSFLGFDAPDAGDEADEAESSAEGNGDSSPENAPA", "length_aa": 106 }, { "orf_id": "-2.38", "sequence": "MPSCTMNCAFRRARSRASCRRFPRRCSRPRRPRRRRRERRTRGSSAPRSWTPAERR", "length_aa": 56 }, { "orf_id": "-1.17", "sequence": "MLPPNCAERSAPSPISSLVLPASAALSTPMLRSCEPSTVARPAYSDLARPTAPAAPFAHCCICAALPLNTLSMAPRFCCSSLALLTLLATPAPIAAAVTAAAAAAAAPHLLSDPVAPPSLLCRSRVSPRIDTITVFLAMAALVSSRGKSGGRPRRAGVAGGCRGRPVRVTCLGHVRRLSTPAVALVQLAHDRVALRDRQAFIGGRVHAQLHDELRL", "length_aa": 216 }, { "orf_id": "-3.70", "sequence": "MSGPAGQGDMSRTCPPAIYAGCCACSARARSRRAPRSSGVHRRPGPCPAAR", "length_aa": 51 }, { "orf_id": "+1.10", "sequence": "MQLGMDPAAYERLTIAERDAIVRELNKRNSRRR", "length_aa": 33 }, { "orf_id": "+2.41", "sequence": "MAKNTVIVSILGDTRDLQSKLGGATGSLSKWGAAAAAAAAVTAAAIGAGVAKSVKSASELQQNLGAMDSVFKGNAAQMQQWANGAAGAVGLAKSEYAGLATVLGSQLRNMGVESAALAGKTNELIGLGADLSAQFGGSTSDAVSALSSLLRGERDPIERYGVSINEAAVQAKMAEMGLTGLTGEAEKNAKLQATLALLYQQTADAQGAFARESTTLAGAQQRLAAGAENLFATFGTALLPAFTAVTAAAGVLLNKLQGSDWFAGVTASITGASNAFADFVFGLLNGTATLDFGALFAGLLPAVISGVQAAAGWIAGGGLNSLVAGLTAGRGAMLDGAVQLFTALAQALPMILPALLTAVLGFVTQLVAQLATFVPQLLNAGVQMFTQLITALVTVIPSILTTLVTLLPGLLTTLLGMIPVILGAAVQVFTQLVAAIPVIIPPLIEAVVGLLPQLVASIVSMLPGILQGAIELFTALVQALPIILPTLLMGILNLLPSILSSVISMIPALINGAVQLFTGIVQALPKIIPQLISALIGLAPTMISTLIGLVPQLIRAGVDLIGGLVKGLMQAAGSVGSALLEIAQNAVGDFLSFLGIHSPSRLFMGFGKNTVQGLVLGLTRNAGLVDGAMGALSSRVGDGFSPVLTTPEIDSAFNSYSAARSSSAGAAPVYQISVSTLNATAETGRVIVEAIRDYEDAGGRL", "length_aa": 701 }, { "orf_id": "+1.11", "sequence": "MGRSCSCSCCRHGCRDRGRRRQERQECQRAAAEPRGHGQRVQGQRGADAAVGERRGRRGRPG", "length_aa": 62 }, { "orf_id": "+3.64", "sequence": "MPASCSRTSGPWTACSRATRRRCSSGRTARPARSAWLSPSTPAWLPCSARSCATWAWRAPRWPARPMS", "length_aa": 68 }, { "orf_id": "+3.65", "sequence": "MAARRMPCRPCRRCCAANVTRSSATACRSTKRPCRRKWPRWG", "length_aa": 42 }, { "orf_id": "-1.16", "sequence": "MACSFAFFSASPVRPVSPISAIFACTAASLIDTP", "length_aa": 34 }, { "orf_id": "-1.15", "sequence": "MNSCTAPSSMAPRPAVRPATRLLRPPPAIQPAAACTPEITAGSRPANSAPKSSVAVPFSSPNTKSANAFDAPVIDAVTPANQSLPCSLLSSTPAAAVTAVNAGSSAVPNVANRFSAPAARRCCAPASVVLSRANAP", "length_aa": 136 }, { "orf_id": "-1.14", "sequence": "MNICTPAFSSCGTNVASCATSCVTNPSTAVSSAGRIIGSA", "length_aa": 40 }, { "orf_id": "-1.13", "sequence": "MPRKLRKSPTAFCAISSSAEPTLPAACIRPLTRPPIRSTPARMSCGTRPIRVEIMVGARPISALISCGMIFGSACTMPVNSCTAPLISAGIIEITDDRMDGSRLRMPISSVGRMIGSACTSAVNSSIAPCRMPGSIDTIDATSCGSSPTTASISGGMITGIAATSCVNTCTAAPRMTGIIPSSVVSRPGSSVTSVVRIDGMTVTRAVIS", "length_aa": 209 }, { "orf_id": "-3.69", "sequence": "MNAEEAQEVPYGVLRDFEQRRADAAGCLHQTLDQTADQIDAGADELRHETDQG", "length_aa": 53 }, { "orf_id": "-1.12", "sequence": "MNALSISGVVSTGLNPSPTRELSAPMAPSTRPALRVRPSTRPCTVFLPNPMNSRLGE", "length_aa": 57 }, { "orf_id": "-2.37", "sequence": "MPVGSVQGVSPALSNPAPSIRRISARCSSTRPNSGRSMTVTAGPPHPRSRGSLRRSHGRSRPSRSAC", "length_aa": 67 }, { "orf_id": "-1.11", "sequence": "MGLDGIRHGDGGHGTLPAVGLVERVAGCHIDHAAGEQLRQSAGLIARDPPDLLARCERAAGHGVLGVEQLEGHQPHVGFHADALPRSPALDRELQRIRHAGRIPARQQRRDGDRVEQPIAGGVVGHQVEIGGLDAGRRGPLDRTPIPDRCRRHVCSCVGQLPEERPRAARHAQLAVGGRAVEIGVTPAVQRNAVAHTGDNRDQLAARRAGSRAGVHAQPPAARIGCGAVLAHHARGKRPGRISRALEPGPEYPADLGALQLDAAEQRALDDGHSRPPASS", "length_aa": 280 }, { "orf_id": "+3.66", "sequence": "MRGAGCDRHRAPAVRPRRAAARRDPPDTRGRVRERGRYALDASHGHGAREQRRSLYGQLAAAHERRRGCPHGARRADPGCPRYALRHCAVLPA", "length_aa": 93 }, { "orf_id": "+1.12", "sequence": "MTVIERPLFGRVELQRAEIRRILGAGFESAGDTPWTLPTGMVRENSAAAYTGSWRLRMNAGAAARTARGELIPVVPGMRYGIALYCRRDADFNGTATNSKLRVSSSSGTFLGQLTYAAADMPAAAVWYRRAIEWTAPAGVQSAYFDLVADNTAGYGLLDSITVTPLLPSWYPAGMADALQLTIKRGGSRQSVGVKTDVGLMTFQLLNAEDPMAGGTFAPGQEVRGISRDQAGGLSELFTGRVVDVAAGYPLNKSNGRQRAVTTITVADAVKTHGETPRYGVAIPTGFETFESRISRLAGSALAPIEAPAQGAPREVYAF", "length_aa": 319 }, { "orf_id": "+2.42", "sequence": "MSPVCATALRCTAGVTPISTARPPTASCACRAARGRSSGS", "length_aa": 40 }, { "orf_id": "+2.43", "sequence": "MRSSGPRRPASSPPISTWWPTTPPAMGCSTRSPSRRCCRAGIRPAWRMRCSSRSSAGDLGRASA", "length_aa": 64 }, { "orf_id": "+3.67", "sequence": "MDRAGRRPVRLFRPGGRQHRRLWAARLDHRHAAAAELVSGRHGGCAAAHDQARGISAERRRENRRGADDLPAAQRRGPHGRRHVRTGPRGPGDLARSGRRTVGAVHRPRGRCGSRLPAQQVQRPAACRDHHHRGGCRQDPRRDPALRRGDPYRVRDVREPH", "length_aa": 161 }, { "orf_id": "-2.36", "sequence": "MPPAMGSSALSSWKVISPTSVFTPTLCRDPPRLIVSCSASAMPAGYQLGSSGVTVIESSSP", "length_aa": 61 }, { "orf_id": "+2.44", "sequence": "MPSRPTARPRATAWRSLPGSRRSRAALAGSPARLWPRSKRPRRARPERCTRSNA", "length_aa": 54 }, { "orf_id": "-3.68", "sequence": "MPSSFWLSRSAPSTNVVAGDDWNTEIRSGIRTRTPLGARPARALRSGPEPSRRAG", "length_aa": 55 }, { "orf_id": "-2.35", "sequence": "MVVAPTSQAGDGPRQAVAHVDVLHADREPGIPRHLHAVAGQPRGDSRRCPAGHQSAVSVLRPAGQRRGRQPHEHVRRAGGPARPAPAVVGPHAEVVALSRRQPAHVVQRAIVGRRDDALSEPGIRRGLKLPLRDAGPAVVGDGAGGHAHAVGGDIAERRRARRCRRLGDPGEVVEPGDVLQVAPAVAQHLTERDAAAPAVSAVADIDVHDVEPAHRAIGHARGHERLSAVNVPGGQTVDLAPLLAVVVELRASRAAGADRGFQVAANGRVVAILVLAQQIRAEHERGSRRRLEYGNQVRH", "length_aa": 300 }, { "orf_id": "+3.68", "sequence": "MPDLISVFQSSPATTFVLGADLLSQNEDGNYSTVRCYLKATVGPGGATSSQFNDYGEQWGQIDGLTTWHIHSGKPFMPSGVPNGAVRWLDVVDVNIGHGADGRRGGVTFRQVLRYGGRDLQHVAGFDNFPRIAKPPAAPGTPTLGNVTTNSVRVSAGPIPDDGGAGVTQWQFQAATDAGFTQGVVTSANNGPLHDVGGLTPGQRYYFRVRAYNRRGWSGWSAGAPDVFVGLPAPTLTGWTQDADGALVASWTAPAVTTGLTGYRVQVARDAGFTVGVQNIDVGNRLSWPVAGLAGGRYYHARVAARTAGGVNAYSGSRQALLVLSSGDLDGWTRVGQLPAGMAAFTAEGIRRGTVAGRQALVLENLSTSAAQLTTGQLGLQRVVTGLKIGSAYRFRASAQLTDNAALARQYRLQVVGEGAGPVTAVTTALTALGDGIEFVADTTTATLQIMLAQGVTVPADTEAVERVAFSGIELVELVTDYPVRLRETVYESNLANHFDLACNSVGATWYVGKDGVTRFRLPGTALPVSAVFTDETDDTALHYIDVAAAYDTRGMVNRLDVTNYGVSDDRETEENDDLIVVEQQSIDAFGVRSARLEVNLWDQAPYDESLTDRLANLLAESAEPRLFVSSFRWNAQENLAAANALDVGQRITVRFNGTEQDSQIVALQHDITPRRWIVTVTLRRL", "length_aa": 686 }, { "orf_id": "+2.45", "sequence": "MGPDRRSDHLAHSQRKAVHALGRAQWRGALARRRGRQYRPRR", "length_aa": 42 }, { "orf_id": "-3.67", "sequence": "MTPPRRPSAPWPILTSTTSSQRTAPLGTPEGMNGFPL", "length_aa": 37 }, { "orf_id": "+1.13", "sequence": "MARCAGSTSWTSISATALTAGAAASRSVRCCATAGATCSTSPGSTTSPGSPSRRQRRARRRSAMSPPTACACPPAPSPTTAGPASRSGSFRPRRMPGSLRASSRRPTMARCTTWAG", "length_aa": 116 }, { "orf_id": "-3.66", "sequence": "MTPAPPSSGMGPADTRTLLVVTLPSVGVPGAAGGLAIRGKLSNPATCCRSRPP", "length_aa": 53 }, { "orf_id": "+2.46", "sequence": "MAVSGRDGCRVHSGRRHVGQQWPAARRGRADAWTALLLPRAGLQPPGLVWLVRRRA", "length_aa": 56 }, { "orf_id": "-3.65", "sequence": "MVTAGAVQLATRAPSASCVQPVSVGAGSPTNTSGAPADQPDQPRRL", "length_aa": 46 }, { "orf_id": "+1.14", "sequence": "MPGSRSACRTSTWATACRGPSPAWLVGATTMPASQLAPPAASTPTQDLGRRCWCSALAISTAGPAWGSCRPAWRRSRPRASGAAPSPAGRLWCSRTYPRQRRSSPRGSSACSASSPV", "length_aa": 117 }, { "orf_id": "+2.47", "sequence": "MARRRPGWWALLPCPRRSSHRRRRQRLLRISAGAAGAQLWRSRRLDPRGAAAGRHGGVHGRGHPARHRRRPAGSGAREPIHVSGAAHHGAARPAARRHRSEDRQRLPLPRIRAADR", "length_aa": 116 }, { "orf_id": "-3.64", "sequence": "MTTRCRPSCPVVSCAADVDRFSSTRACRPATVPRRMPSAVNAAMPAGSCPTRVQPSRSPELSTSSACRDPE", "length_aa": 71 }, { "orf_id": "-2.34", "sequence": "MAGATGPANAWIVPTGASCCRISPTRRCRLRTASSSCLRAMSEPPKRHGDDPPARGNVVLQRDDLAVLLGAVESHGDALPHVQRVGCRQVLLRVPPEARHEQARLCGLGQQIGQAVGQRLVIGRLVPQVDFEPSRAHAERVDALLLHDDQVVVLLGLAVVRYAVVGHVQAVDHAARVIRGRHVDVVQRRVVGLVGEHGRDRQSGARQPEAGYAVFAHVPGRAHAVAREIEMVRQVGLVDRFAQSHRVVGHQLHQLDARERDALDSLGVGRHGDALSEHDLQRRGRGVGHELDTVPQGRERRCDGRNRPCPLSHYLQAILTRQSGVIGQLRGCAEAVGAADLQTGDDALQAELPRGELRR", "length_aa": 359 }, { "orf_id": "-3.63", "sequence": "MICSVAVVVSATNSIPSPRAVSAVVTAVTGPAPSPTTCRRY", "length_aa": 41 }, { "orf_id": "-3.62", "sequence": "MSSVSSVNTAETGRAVPGSRKRVTPSLPTYQVAPTLLHARSKWFARLDS", "length_aa": 49 }, { "orf_id": "+2.48", "sequence": "MQQRGRDLVRGQRRRNPLPAAWHRSAGLGRVHRRDRRHGAALHRRGGRV", "length_aa": 49 }, { "orf_id": "-3.61", "sequence": "MTSSRAERTPNASMLCCSTTIRSSFSSVSRSSDTP", "length_aa": 35 }, { "orf_id": "-3.60", "sequence": "MPCPGPPGRALGRRARGTWLCRCRPRRSCRSGRTAPGSRHARAAGRPSARSWPARRGRRTRGSCPRGPAAAGSRPRGAAGCAPLLRAVSGPCQSLLSVTVTIHRRGVMSCCSATIWLSCSVPLNRTVMRCPTSSALAAARFSCAFHRKLDTNRRGSADSASRLARRSVSDSS", "length_aa": 172 }, { "orf_id": "+2.49", "sequence": "MERAGEPGGSQRAGRGAAHHRAIQRHRARQPDRRAAARHYPAPVDRHRDA", "length_aa": 50 }, { "orf_id": "-1.10", "sequence": "MRVLTVLRSRQHHGLGPAGLAHGVELGLCRVQGHQGAPSGVGHVERGCAVAGPVGRADQGEQRRVVGTRELPAVHQHVVGRRDGAGERVDRAHGGQLLQDLAHAALQAAHRFFELSQGHVRAS", "length_aa": 123 }, { "orf_id": "+1.15", "sequence": "MALRQLEEAVRSLQRRVGEILQQLAPVGTIHAFAGPVAPANYVLMDGRQLSRADYPALFALIGTTYGAGNGTTTFHVPDARGRALVALDTAQAEFNAMGKTGGAKTVVLTAAQNGKHSHSLSAGGHAHAFSWGGAGGTSVYVQNAIAAVGAPPSNNLTTYQNGWNVTAESGSGEAHNNLQPFLTVAYVIKAK", "length_aa": 192 }, { "orf_id": "-2.33", "sequence": "MAPPVLPMALNSACAVSRATRARPRASGTWNVVVPLPAP", "length_aa": 39 }, { "orf_id": "-1.9", "sequence": "MLRLQLVVDRGRLVGGRLGLGDLGGRLGGRLGGRQRGAVGVQLGLQRLGSLAGGSGLSCSCSAELGLHAQLRDLLHQHGLDQGHGVSLSGVDMSRTCQGSFGFDHVGDGQERLQVVVRFAATRFGRDVPAVLIGRQVVARGRAHGRDRVLHVHACAAGPAPRERVSVTAGAE", "length_aa": 172 }, { "orf_id": "+3.69", "sequence": "MGRGRRHKRVRAERDRGRGRAPEQQPDDLSERLERHGRIG", "length_aa": 40 }, { "orf_id": "-2.32", "sequence": "MRSCAICSTSTVSIRVMVSLSRGWTCLGHVRGHLALIT", "length_aa": 38 }, { "orf_id": "-3.59", "sequence": "MCCELIPTRGSRGPNGLDTFGAVLAPLGNMVMGSLLSLGVTRRRAAPAARRRSGPARRGPARSRGSRGPARGSARGSAAWRGRRPARPAAPRLARRRQRPELQLQRRTRLACAAARSAPPARSRSGSWCLSLGGGHV", "length_aa": 137 }, { "orf_id": "+1.16", "sequence": "MTLIETVLVEQIAQLRMQAEFGAAAAAQAAAAGERAEALQAELDAYRATLPTPEPTPEPAPEIPETEPAPDEPAPIYDELQAQHAAE", "length_aa": 87 }, { "orf_id": "-2.31", "sequence": "MRSSRDGSRPGSGPRGGADLAVNGQTLLGLKRSGHVARSIAVTAVSARGAEIPAARDHPRLPHGQVLAVAVVAADALAGAALRAEIPAPRQRERRRSCSRRAAGDTGSRPADRLDAAAVQADLVVQAVPGRVAGAADLSDLRALGHAAPADADAFQVHVERRDAGPVVDHHGDAGGVVHPAGVRDRAGLDGVNVLEPDQVSAVVLRADPHAGITGAERTRHLRGGLGPIGEHGHGISPVSRGYSAACCACSSS", "length_aa": 253 }, { "orf_id": "+3.70", "sequence": "MTMFPNGAKTAPKVSSPFGPRDPRVGISSQHNGADLIGFEDVHAVEAGTVTHAGWMNDAAGITVVIDHGAGITSLYMHLERVSVGRGRVAEGAKIGEVGSTGNATGDCLHYEIRLHGRSIEPIGWTAARIAGGAPAAAAPAFPLPWGWYFGPQSGPRESVSGYHGNGEHLAVWQARMIARGWDLGPSGADGRYGDRTRDVARAFQAEKGLTVDGKIGPATWAAAWTAPVT", "length_aa": 230 }, { "orf_id": "+1.17", "sequence": "MGPRPPRRCRVRSAPVIPAWGSARSTTALT", "length_aa": 30 }, { "orf_id": "-3.58", "sequence": "MMPAPWSITTVMPAASFIQPACVTVPASTA", "length_aa": 30 }, { "orf_id": "+2.50", "sequence": "MGLVFRPSERPPRERQRLPRQRRAPGRVAGADDRARLGSRPLGR", "length_aa": 44 }, { "orf_id": "-3.57", "sequence": "MIGDRQGHVAAAVCVVMLLTDVRPQSVVQGLDAGQPALDPAHAAVAGVQPGTGRADHGDDDQRPLGCAHHVTGAVQAAAHVAGPILPSTVRPFSA", "length_aa": 95 }, { "orf_id": "+1.18", "sequence": "MTARSAPPRGPLPGRLPSRDERNRVGADHRRRGRRVRCLAERPLRPHGPDRAPAGQRRDPEQPTVGVHPSAA", "length_aa": 72 }, { "orf_id": "+2.51", "sequence": "MGRCLDGSRHVMSATEWALIIVAVVGASGAWLNARYGRMGRIERRLASVETLNNRLWAYIRQQHDHAYRSGYVPLPIPDHLFENGDPE", "length_aa": 88 }, { "orf_id": "-2.30", "sequence": "MRGAGSVIQGLRSRTGDRGSAGARSRCGMRGHAADGCTPTVGCSGSRRWPAGARSGPCGRSGRSARHRTRRPRRR", "length_aa": 75 }, { "orf_id": "+3.71", "sequence": "MTTHTAAATCPCRSPITCSRTETLNDRSRPPHAPAASRAAASQL", "length_aa": 44 }, { "orf_id": "+1.19", "sequence": "MTDPAPLTRRQRRAQLRASSERFLTPAFRRWAYGVAGAAVAAAVFAGWLPEGALAVILPLIMAVLYVDKTGAPL", "length_aa": 74 }, { "orf_id": "+3.72", "sequence": "MGLRRRRRGRRGCRVRRLAARGRSGRHPAADHGRALRR", "length_aa": 38 }, { "orf_id": "-3.56", "sequence": "MGDRPIPRQRRSARPAAAAVHGCRPAREATTPPALWEPLRAPKHDSAPRRIGRGRCFVLSAVLRAARRSYRRRARP", "length_aa": 76 }, { "orf_id": "+2.52", "sequence": "MFRRSQRLPERRRRGCFTRRPASMYGCSSWSS", "length_aa": 32 }, { "orf_id": "-1.8", "sequence": "MARRTIELLTDDLDGSDGDGVATVTFALQGTTWEIDLSPDNAAQLDQLLQPYMDAGRRVKQPRRRRSGSL", "length_aa": 70 }, { "orf_id": "+3.73", "sequence": "MVASRAGRHPCTAAAAGRAERRCRGIGRSPTWCPAART", "length_aa": 38 }, { "orf_id": "+2.53", "sequence": "MSGDRSISHVVPCSANVTVATPSPSLPSRSSVSSSIVRLAMISPPALGCALSASRSCRSRPCAAARSSRRYGASCTR", "length_aa": 77 }, { "orf_id": "-2.29", "sequence": "MSLDMSMSLSLDMSMSLSHVQEGHTMELISPEPAKRPATAMISIDAFAAQRKVATRTVRRWLDAGRVPGAVKVGNKWSLPADAIVQDALPGVMDTVKDTPVSIDRRQHVGSELTVAGVLAPLPVMVPLDTAARVLGVSEYTMRRNVDYFELQRMGENGSYVMPKARIRELEG", "length_aa": 172 }, { "orf_id": "+1.20", "sequence": "MYSLTPSTRAAVSSGTMTGSGASTPATVSSLPTCCRRSIDTGVSLTVSMTPGRASCTIASAGSDHLLPTFTAPGTRPASSQRRTVRVATFRCAANASIEIMAVAGRLAGSGEISSMVCPSWTCDSDMDMSSDSDMDMSSDTRA", "length_aa": 143 }, { "orf_id": "-1.7", "sequence": "MVAAGRRDRAGCSARCHGHCQRHARVNRPPAARRQ", "length_aa": 35 }, { "orf_id": "+2.54", "sequence": "MTVTWTCLVTVTWTCQVTRGHDEAPHVAGSGRSWGASCWPAVKRRRATAAGAQVPAP", "length_aa": 57 }, { "orf_id": "-3.55", "sequence": "MALRVSRRAPWRCRSASAMALSRRGNAGSRNRPFRSSCGGPRSRGRHLSACCRRTPPLDSWPAARAPRSPRAGDVGRFVMPACHLTCPCHCH", "length_aa": 92 }, { "orf_id": "+3.74", "sequence": "MTKRPTSPARGDRGARAAGQLSSGGVRRQQALRCLPRDLGPPHELRNGRFRDPAFPRRDSAMADADLQRHGARRETRSATRGPQDLRQRAAVDLNKCHVCECIARYLHLCRHTARNARDALDVRRDSPCV", "length_aa": 130 }, { "orf_id": "+1.21", "sequence": "MGRELLASCQAAACDGSRRSGACPVTSAHRMNCETVGSEIPRSHAEIVPWLTPTCSAMARAERPAAPRVARRISGSALLSI", "length_aa": 81 }, { "orf_id": "-2.28", "sequence": "MTLIQIDSSALPEILRATRGAAGLSARAMALQVGVSHGTISAWERGISEPTVSQFMRWAEVTGQAPERLLPSHAAA", "length_aa": 76 }, { "orf_id": "-1.6", "sequence": "MVALIGRVFGYRPSRGAWWGSWSHGWDSRHMVSLDAHLARPWHSLRCVGINVDT", "length_aa": 54 }, { "orf_id": "+2.55", "sequence": "MPTHRKECQGRARCASRLTMCLESQPCDHDPHQAPREGR", "length_aa": 39 }, { "orf_id": "+1.22", "sequence": "MCVETHHVSRIPTMRPRPPPSAPRGAITEYAAYEGYQRCRRQRNKNG", "length_aa": 47 }, { "orf_id": "-3.54", "sequence": "MGATAAPGHALTAAPLALGLAPGLITRSCFAVAYSVGSPHRPRIRLSPLSGRLVGVVVAWLGF", "length_aa": 63 }, { "orf_id": "-2.27", "sequence": "MGSARRSQAEPREITTARGVSASRTGYELGGWIGGHCSARSCLDRCAPSSRAGTGTDYPFLFRCRLQRW", "length_aa": 69 }, { "orf_id": "+1.23", "sequence": "MPARELGAQRSRHDRALQWPPIHPPSSYPVRDALTPRAVVISLGSAWLRRADPMCPSRVQK", "length_aa": 61 }, { "orf_id": "-1.5", "sequence": "MRGLGTMAPPSSFLNSGGAHGICSTEPGGA", "length_aa": 30 }, { "orf_id": "-3.53", "sequence": "MLVVLGWLLLLLLLSALTGGWRSLSSSCCWSLCCSRGVGFVGYVPSPCSMVKVGEGVGNYGPP", "length_aa": 63 }, { "orf_id": "-2.26", "sequence": "MRAASSCRPRDRAAFSRSICRARRARVAAALAPAVSSDRWLAVSLVVVLLVTVLLSGCGVCGVCPFALLDGEGR", "length_aa": 74 }, { "orf_id": "-1.4", "sequence": "MVGGLSRRRAVGHCVALGVWGLWGMSLRPARW", "length_aa": 32 }, { "orf_id": "+1.24", "sequence": "MTNSTTTRETANHLSELTAGARAAATRARRARQIDLLNAARSLGLQLDAARTQLIVTGTEGLPAAEAFVAAGSVELGGIVAQLDRLDLGIDRIAAERVDAGDVIAWLEWHSIHLYPYQRRAIERLLPA", "length_aa": 128 }, { "orf_id": "-1.3", "sequence": "MWGLGSTISRRRGPLAARRERSGRQQPLDRSTLIRVQVDGVPFQPRDHVAGVNALGRDPVDAEIQAVELRDDAPQLNATCGHERLGSGQPFRSGNDQLSASCIELQAEGSGGVQ", "length_aa": 114 }, { "orf_id": "-2.25", "sequence": "MECHSSHAITSPASTRSAAIRSMPRSKRSSCATMPPSSTLPAATNASAAGSPSVPVTIS", "length_aa": 59 }, { "orf_id": "-3.52", "sequence": "MISGRVLALDQLASAVGADPAVTVQAQQPVALVLGRSAAVLAHAAAASCRMRCTMAGSNRRSPPSVRVQGILPASAHRRTVSTRTPNSSATWPAVSFLAWVGSGELVATAVMVGTGVALSVTGGVGVGVYDQPASGATSCASRAFRQAAAARSLDADTGTGGWSAIPATRSRRRRQRARPRSGRCRDPSGRAARRCPPAQRYLRPRTPRQRAALPFR", "length_aa": 217 }, { "orf_id": "+3.75", "sequence": "MAGMALHPPVPVSASSDRAAAACLNALDAQLVAPDAG", "length_aa": 37 }, { "orf_id": "+3.76", "sequence": "MPTMTAVATNSPLPTHAKKLTAGQVAELFGVRVETVRRWADAGKIPCTRTLGGDRRFDPAMVQRILHEAAAA", "length_aa": 72 }, { "orf_id": "-1.2", "sequence": "MQIQPSRFRHSSRLLLYSADRLLCWLMLLRLRAGCAAPWRGRTVDPRPACGCRGSCRRRPIGGRSRRGRRTARPPGRRSASWRGWVAGSW", "length_aa": 90 }, { "orf_id": "-2.24", "sequence": "MQDALHHGGVEPSIPAQRAGAGDLAGVGPSADGLDADAEQLGHLAGGQLLGVGG", "length_aa": 54 }, { "orf_id": "+2.56", "sequence": "MGRRRQDPLHPHAGRGSTVRPRHGAAHPARSRSSMSQHSSRSAEYKSNRLLCLNRDGWICTYCRCELIEGKNATADHVVSKATWIREGREGSPDQLDNLVASCTSCNSSKGDRDTMPRVNYYNPRWFAGLVPA", "length_aa": 133 }, { "orf_id": "-1.1", "sequence": "MSVALATEKPARRRRRAAGRAGQAGTRPANQRGL", "length_aa": 34 } ] }, "sequence": { "length_bp": 17442, "gc_percent": 68.62, "ambiguous_bases": {} }, "warnings": [ "Baseline ORFs are not final gene calls.", "Compare against Glimmer/GeneMark/PHEONA and instructor review before accepting annotations." ], "structure": { "note": "Structure-based function (AlphaFold/ESMFold + Foldseek) is Phase 4 and hosted-API-only. No provider configured (set PHAGEFLOW_STRUCTURE_PROVIDER once a hosted folding/search path is approved).", "count": 0, "items": [], "method": "deferred" }, "baseline_orfs": { "count": 160, "items": [ { "id": "+2.25", "end": 379, "frame": 2, "start": 2, "strand": "+", "length_aa": 125, "length_nt": 378, "stop_codon": "TGA", "start_codon": "TTG" }, { "id": "-3.84", "end": 250, "frame": 3, "start": 11, "strand": "-", "length_aa": 79, "length_nt": 240, "stop_codon": "TGA", "start_codon": "GTG" }, { "id": "-1.23", "end": 240, "frame": 1, "start": 25, "strand": "-", "length_aa": 71, "length_nt": 216, "stop_codon": "TGA", "start_codon": "GTG" }, { "id": "-2.51", "end": 458, "frame": 2, "start": 237, "strand": "-", "length_aa": 73, "length_nt": 222, "stop_codon": "TGA", "start_codon": "GTG" }, { "id": "-1.22", "end": 414, "frame": 1, "start": 247, "strand": "-", "length_aa": 55, "length_nt": 168, "stop_codon": "TGA", "start_codon": "GTG" }, { "id": "+3.57", "end": 401, "frame": 3, "start": 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