Pipeline job
demo_phage
DemoPhage synthetic mini sequence for Phase 0 harness testing
succeeded
Length228 bp
GC56.58%
Targetphage
Baseline ORFs2
Exports
Draft review queue
2 gene callsDraft OK0
Check start0
Check boundary0
Needs evidence2
Phase 2 derives this queue from ORF length, start codons, and neighbor gaps/overlaps. BLAST/Pfam/tRNA evidence is still pending, so these are review prompts rather than final annotation calls.
Running evidence stage (tRNA detection)… this page will refresh automatically.
tRNA evidence
pendingThe evidence stage is queued. tRNA results will appear here once it finishes.
Review warnings
- Sequence is 228 bp, which is much shorter than a typical complete phage genome.
- Baseline ORFs are not final gene calls.
- Compare against Glimmer/GeneMark/PHEONA and instructor review before accepting annotations.
Tool availability
blastnmissing
blastpmissing
aragornmissing
hmmscanmissing
genemarkmissing
glimmer3missing
makeblastdbmissing
trnascan_semissing
Baseline ORFs
six-frame start/stop ORF scan| ID | Strand | Frame | Start | End | Codons | Length |
|---|---|---|---|---|---|---|
| +1.1 | + | 1 | 10 | 114 | ATG → TAA | 34 aa |
| +1.2 | + | 1 | 124 | 228 | ATG → TAG | 34 aa |
Review details
Phase 2 draft curation| Gene | ORF | Status | Coordinates | Flags | Decision | Note | Save |
|---|---|---|---|---|---|---|---|
| gene-001 | +1.1ATG → TAA, 34 aa | needs evidence | 10..114 (+1)adjacent/first | Short ORF (34 aa) | Saved 6/21/2026, 3:55:20 AM | ||
| gene-002 | +1.2ATG → TAG, 34 aa | needs evidence | 124..228 (+1)9 nt gap | Short ORF (34 aa) |