Pipeline job

KillerTomato

Microbacterium phage KillerTomato complete sequence, 17442 bp including 9-base 3' overhang (CCCGCCCCA), Cluster EE

succeeded

Length17,442 bp

GC68.62%

Targetphage

Baseline ORFs160

Exports

JSON report ORF CSV Review CSV tRNA CSV Proteins FASTA

Draft review queue

160 gene calls

Draft OK6

Check start13

Check boundary31

Needs evidence110

Phase 2 derives this queue from ORF length, start codons, and neighbor gaps/overlaps. BLAST/Pfam/tRNA evidence is still pending, so these are review prompts rather than final annotation calls.

tRNA evidence

Aragorn

ID	Strand	Start	End	Isotype	Anticodon	Score
trna.1	+	9,448	9,522	tRNA-Leu	GAG	-

Predicted proteins

160 translated

Baseline ORFs translated to amino-acid sequences (download as FASTA above). These feed Pfam/BLAST evidence and are drafts, not final calls.

Pfam domain hits

unavailable

Pfam/HMMER is not configured on this worker yet. Install hmmscan and set PFAM_DB to a pressed Pfam-A.hmm for domain-based function hints. (Pfam/HMMER not configured: missing Pfam HMM DB (set PFAM_DB to a pressed Pfam-A.hmm).)

BLASTp function hints

unavailable

BLASTp is not configured on this worker. Set BLASTP_DB to a local curated phage protein DB, or PHAGEFLOW_REMOTE_BLAST=1 to use NCBI remote BLAST (slow, rate-limited; fine for class-scale volume). (BLASTp not configured: set BLASTP_DB to a local protein DB, or PHAGEFLOW_REMOTE_BLAST=1 to use NCBI remote BLAST.)

Structure-based function

deferred

Phase 4: 3D-structure function prediction (AlphaFold/ESMFold + Foldseek) is hosted-API-only and not enabled yet. This row is the seam for that future evidence. Structure-based function (AlphaFold/ESMFold + Foldseek) is Phase 4 and hosted-API-only. No provider configured (set PHAGEFLOW_STRUCTURE_PROVIDER once a hosted folding/search path is approved).

Review warnings

Baseline ORFs are not final gene calls.
Compare against Glimmer/GeneMark/PHEONA and instructor review before accepting annotations.

Tool availability

blastninstalled

blastpinstalled

aragorninstalled

hmmscaninstalled

genemarkmissing

glimmer3missing

makeblastdbinstalled

trnascan_semissing

Baseline ORFs

six-frame start/stop ORF scan

ID	Strand	Frame	Start	End	Codons	Length
+2.25	+	2	2	379	TTG → TGA	125 aa
-3.84	-	3	11	250	GTG → TGA	79 aa
-1.23	-	1	25	240	GTG → TGA	71 aa
-2.51	-	2	237	458	GTG → TGA	73 aa
-1.22	-	1	247	414	GTG → TGA	55 aa
+3.57	+	3	297	401	ATG → TGA	34 aa
+1.1	+	1	361	1122	GTG → TAG	253 aa
-1.21	-	1	439	1161	ATG → TGA	240 aa
+3.58	+	3	459	611	GTG → TGA	50 aa
-2.50	-	2	528	872	ATG → TAG	114 aa
+2.26	+	2	608	721	ATG → TGA	37 aa
+2.27	+	2	788	1660	TTG → TGA	290 aa
-2.49	-	2	903	1115	GTG → TAG	70 aa
-2.48	-	2	1119	1301	GTG → TAG	60 aa
+3.59	+	3	1125	2585	ATG → TAG	486 aa
-2.47	-	2	1305	1781	GTG → TAG	158 aa
-3.83	-	3	1340	1447	TTG → TGA	35 aa
-3.82	-	3	1571	1744	GTG → TGA	57 aa
+1.2	+	1	1657	1890	ATG → TAG	77 aa
-1.20	-	1	1741	1926	ATG → TGA	61 aa
-3.81	-	3	1838	1972	ATG → TAG	44 aa
+2.28	+	2	1844	2029	GTG → TGA	61 aa
-2.46	-	2	1941	2558	GTG → TAG	205 aa
-3.80	-	3	1994	2137	GTG → TAG	47 aa
+2.29	+	2	2048	2155	GTG → TAA	35 aa
-3.79	-	3	2174	2347	ATG → TAG	57 aa
+2.30	+	2	2231	2467	GTG → TGA	78 aa
-3.78	-	3	2378	2479	TTG → TAG	33 aa
+1.3	+	1	2464	2604	GTG → TAG	46 aa
-1.19	-	1	2638	3363	GTG → TAG	241 aa
+3.60	+	3	2649	2744	GTG → TAG	31 aa
+1.4	+	1	2683	3837	GTG → TGA	384 aa
+2.31	+	2	2990	3121	TTG → TGA	43 aa
+2.32	+	2	3335	3484	GTG → TGA	49 aa
-2.45	-	2	3420	3545	TTG → TAG	41 aa
-2.44	-	2	3609	3704	GTG → TAG	31 aa
+2.33	+	2	3629	3751	ATG → TGA	40 aa
-3.77	-	3	3671	3880	TTG → TGA	69 aa
-2.43	-	2	3720	5654	TTG → TAG	644 aa
+3.61	+	3	3780	5417	ATG → TAA	545 aa
+2.34	+	2	3938	4225	GTG → TGA	95 aa
+1.5	+	1	4222	4437	GTG → TGA	71 aa
-3.76	-	3	4250	4774	TTG → TAG	174 aa
+2.35	+	2	4460	4552	GTG → TGA	30 aa
-3.75	-	3	4787	4903	TTG → TAA	38 aa
-3.74	-	3	4907	5242	TTG → TAG	111 aa
+1.6	+	1	4966	5091	ATG → TGA	41 aa
+1.7	+	1	5227	5487	GTG → TGA	86 aa
-3.73	-	3	5333	5437	GTG → TAG	34 aa
+3.62	+	3	5421	5774	ATG → TGA	117 aa
-3.72	-	3	5480	6154	ATG → TAG	224 aa
+2.36	+	2	5534	5662	GTG → TAA	42 aa
+2.37	+	2	5771	6151	ATG → TGA	126 aa
-2.42	-	2	5886	6317	GTG → TGA	143 aa
-1.18	-	1	5995	7047	TTG → TGA	350 aa
+1.8	+	1	6190	6624	ATG → TAA	144 aa
+2.38	+	2	6308	6508	ATG → TGA	66 aa
+3.63	+	3	6411	7007	GTG → TAA	198 aa
-2.41	-	2	6441	6569	GTG → TAG	42 aa
-2.40	-	2	6576	6836	TTG → TAA	86 aa
+1.9	+	1	6637	7020	GTG → TAG	127 aa
-3.71	-	3	6761	6874	GTG → TGA	37 aa
+2.39	+	2	6866	7000	GTG → TGA	44 aa
-2.39	-	2	6891	7013	TTG → TAG	40 aa
+2.40	+	2	7034	7354	ATG → TAA	106 aa
-2.38	-	2	7212	7382	ATG → TGA	56 aa
-1.17	-	1	7351	8001	GTG → TAG	216 aa
-3.70	-	3	7364	7519	TTG → TGA	51 aa
+1.10	+	1	7369	7470	GTG → TAG	33 aa
+2.41	+	2	7586	9691	ATG → TGA	701 aa
+1.11	+	1	7675	7863	GTG → TAA	62 aa
+3.64	+	3	7752	7958	GTG → TGA	68 aa
+3.65	+	3	7992	8120	GTG → TGA	42 aa
-1.16	-	1	8062	8166	GTG → TAG	34 aa
-1.15	-	1	8200	8610	GTG → TGA	136 aa
-1.14	-	1	8620	8742	GTG → TGA	40 aa
-1.13	-	1	8743	9372	ATG → TGA	209 aa
-3.69	-	3	9215	9376	GTG → TGA	53 aa
-1.12	-	1	9373	9546	TTG → TGA	57 aa
-2.37	-	2	9606	9809	ATG → TGA	67 aa
-1.11	-	1	9664	10506	GTG → TAG	280 aa
+3.66	+	3	9672	9953	ATG → TGA	93 aa
+1.12	+	1	9688	10647	GTG → TAA	319 aa
+2.42	+	2	9908	10030	TTG → TGA	40 aa
+2.43	+	2	10076	10270	GTG → TGA	64 aa
+3.67	+	3	10086	10571	GTG → TAG	161 aa
-2.36	-	2	10149	10334	GTG → TAG	61 aa
+2.44	+	2	10490	10654	ATG → TGA	54 aa
-3.68	-	3	10568	10735	TTG → TAA	55 aa
-2.35	-	2	10644	11546	ATG → TAG	300 aa
+3.68	+	3	10647	12707	ATG → TGA	686 aa
+2.45	+	2	10820	10948	GTG → TGA	42 aa
-3.67	-	3	10856	10969	GTG → TGA	37 aa
+1.13	+	1	10894	11244	ATG → TGA	116 aa
-3.66	-	3	10988	11149	GTG → TAG	53 aa
+2.46	+	2	11153	11323	GTG → TGA	56 aa
-3.65	-	3	11279	11419	GTG → TAG	46 aa
+1.14	+	1	11455	11808	ATG → TGA	117 aa
+2.47	+	2	11507	11857	GTG → TAA	116 aa
-3.64	-	3	11585	11800	GTG → TAG	71 aa
-2.34	-	2	11751	12830	TTG → TGA	359 aa
-3.63	-	3	11873	11998	ATG → TGA	41 aa
-3.62	-	3	12116	12265	GTG → TAG	49 aa
+2.48	+	2	12152	12301	GTG → TGA	49 aa
-3.61	-	3	12338	12445	TTG → TAG	35 aa
-3.60	-	3	12464	12982	GTG → TAG	172 aa
+2.49	+	2	12545	12697	GTG → TAG	50 aa
-1.10	-	1	12694	13065	GTG → TAA	123 aa
+1.15	+	1	12709	13287	ATG → TGA	192 aa
-2.33	-	2	12903	13022	TTG → TAG	39 aa
-1.9	-	1	13066	13584	GTG → TGA	172 aa
+3.69	+	3	13101	13223	GTG → TAG	40 aa
-2.32	-	2	13266	13382	ATG → TAG	38 aa
-3.59	-	3	13301	13714	TTG → TAG	137 aa
+1.16	+	1	13333	13596	ATG → TAA	87 aa
-2.31	-	2	13560	14321	TTG → TAG	253 aa
+3.70	+	3	13620	14312	ATG → TGA	230 aa
+1.17	+	1	13636	13728	ATG → TGA	30 aa
-3.58	-	3	13745	13837	GTG → TGA	30 aa
+2.50	+	2	14054	14188	GTG → TGA	44 aa
-3.57	-	3	14231	14518	GTG → TGA	95 aa
+1.18	+	1	14254	14472	TTG → TGA	72 aa
+2.51	+	2	14279	14545	GTG → TGA	88 aa
-2.30	-	2	14337	14564	GTG → TGA	75 aa
+3.71	+	3	14469	14603	ATG → TGA	44 aa
+1.19	+	1	14542	14766	ATG → TGA	74 aa
+3.72	+	3	14631	14747	GTG → TAA	38 aa
-3.56	-	3	14723	14953	GTG → TGA	76 aa
+2.52	+	2	14822	14920	GTG → TGA	32 aa
-1.8	-	1	14836	15048	ATG → TGA	70 aa
+3.73	+	3	14862	14978	GTG → TGA	38 aa
+2.53	+	2	14927	15160	TTG → TGA	77 aa
-2.29	-	2	15051	15569	GTG → TGA	172 aa
+1.20	+	1	15148	15579	GTG → TGA	143 aa
-1.7	-	1	15235	15342	GTG → TGA	35 aa
+2.54	+	2	15515	15688	GTG → TGA	57 aa
-3.55	-	3	15536	15814	GTG → TAG	92 aa
+3.74	+	3	15576	15968	ATG → TAG	130 aa
+1.21	+	1	15613	15858	GTG → TGA	81 aa
-2.28	-	2	15639	15869	ATG → TGA	76 aa
-1.6	-	1	15886	16050	TTG → TAG	54 aa
+2.55	+	2	15902	16021	ATG → TAA	39 aa
+1.22	+	1	15940	16083	ATG → TAA	47 aa
-3.54	-	3	15965	16156	TTG → TAG	63 aa
-2.27	-	2	16044	16253	ATG → TAG	69 aa
+1.23	+	1	16093	16278	GTG → TGA	61 aa
-1.5	-	1	16219	16311	GTG → TAG	30 aa
-3.53	-	3	16280	16471	GTG → TAG	63 aa
-2.26	-	2	16308	16532	GTG → TGA	74 aa
-1.4	-	1	16318	16416	GTG → TGA	32 aa
+1.24	+	1	16378	16764	GTG → TGA	128 aa
-1.3	-	1	16483	16827	GTG → TAG	114 aa
-2.25	-	2	16533	16712	ATG → TGA	59 aa
-3.52	-	3	16544	17197	GTG → TAA	217 aa
+3.75	+	3	16692	16805	GTG → TGA	37 aa
+3.76	+	3	16854	17072	GTG → TGA	72 aa
-1.2	-	1	16876	17148	GTG → TAG	90 aa
-2.24	-	2	16890	17054	GTG → TAG	54 aa
+2.56	+	2	16967	17368	ATG → TGA	133 aa
-1.1	-	1	17329	17433	GTG → TAG	34 aa

Review details

Phase 2 draft curation

Gene	ORF	Status	Coordinates	Flags
gene-001	+2.25TTG → TGA, 125 aa	check start	2..379 (+2)adjacent/first	Alternate start TTG
gene-002	-3.84GTG → TGA, 79 aa	needs evidence	11..250 (-3)369 nt overlap	Short ORF (79 aa); Alternate start GTG; Large overlap before (369 nt)
gene-003	-1.23GTG → TGA, 71 aa	needs evidence	25..240 (-1)226 nt overlap	Short ORF (71 aa); Alternate start GTG; Large overlap before (226 nt)
gene-004	-2.51GTG → TGA, 73 aa	needs evidence	237..458 (-2)4 nt overlap	Short ORF (73 aa); Alternate start GTG
gene-005	-1.22GTG → TGA, 55 aa	needs evidence	247..414 (-1)212 nt overlap	Short ORF (55 aa); Alternate start GTG; Large overlap before (212 nt)
gene-006	+3.57ATG → TGA, 34 aa	needs evidence	297..401 (+3)118 nt overlap	Short ORF (34 aa); Large overlap before (118 nt)
gene-007	+1.1GTG → TAG, 253 aa	check start	361..1122 (+1)41 nt overlap	Alternate start GTG
gene-008	-1.21ATG → TGA, 240 aa	check boundary	439..1161 (-1)684 nt overlap	Large overlap before (684 nt)
gene-009	+3.58GTG → TGA, 50 aa	needs evidence	459..611 (+3)703 nt overlap	Short ORF (50 aa); Alternate start GTG; Large overlap before (703 nt)
gene-010	-2.50ATG → TAG, 114 aa	check boundary	528..872 (-2)84 nt overlap	Large overlap before (84 nt)
gene-011	+2.26ATG → TGA, 37 aa	needs evidence	608..721 (+2)265 nt overlap	Short ORF (37 aa); Large overlap before (265 nt)
gene-012	+2.27TTG → TGA, 290 aa	check start	788..1660 (+2)66 nt gap	Alternate start TTG
gene-013	-2.49GTG → TAG, 70 aa	needs evidence	903..1115 (-2)758 nt overlap	Short ORF (70 aa); Alternate start GTG; Large overlap before (758 nt)
gene-014	-2.48GTG → TAG, 60 aa	needs evidence	1119..1301 (-2)3 nt gap	Short ORF (60 aa); Alternate start GTG
gene-015	+3.59ATG → TAG, 486 aa	check boundary	1125..2585 (+3)177 nt overlap	Large overlap before (177 nt)
gene-016	-2.47GTG → TAG, 158 aa	check boundary	1305..1781 (-2)1281 nt overlap	Alternate start GTG; Large overlap before (1281 nt)
gene-017	-3.83TTG → TGA, 35 aa	needs evidence	1340..1447 (-3)442 nt overlap	Short ORF (35 aa); Alternate start TTG; Large overlap before (442 nt)
gene-018	-3.82GTG → TGA, 57 aa	needs evidence	1571..1744 (-3)123 nt gap	Short ORF (57 aa); Alternate start GTG
gene-019	+1.2ATG → TAG, 77 aa	needs evidence	1657..1890 (+1)88 nt overlap	Short ORF (77 aa); Large overlap before (88 nt)
gene-020	-1.20ATG → TGA, 61 aa	needs evidence	1741..1926 (-1)150 nt overlap	Short ORF (61 aa); Large overlap before (150 nt)
gene-021	-3.81ATG → TAG, 44 aa	needs evidence	1838..1972 (-3)89 nt overlap	Short ORF (44 aa); Large overlap before (89 nt)
gene-022	+2.28GTG → TGA, 61 aa	needs evidence	1844..2029 (+2)129 nt overlap	Short ORF (61 aa); Alternate start GTG; Large overlap before (129 nt)
gene-023	-2.46GTG → TAG, 205 aa	check boundary	1941..2558 (-2)89 nt overlap	Alternate start GTG; Large overlap before (89 nt)
gene-024	-3.80GTG → TAG, 47 aa	needs evidence	1994..2137 (-3)565 nt overlap	Short ORF (47 aa); Alternate start GTG; Large overlap before (565 nt)
gene-025	+2.29GTG → TAA, 35 aa	needs evidence	2048..2155 (+2)90 nt overlap	Short ORF (35 aa); Alternate start GTG; Large overlap before (90 nt)
gene-026	-3.79ATG → TAG, 57 aa	needs evidence	2174..2347 (-3)18 nt gap	Short ORF (57 aa)
gene-027	+2.30GTG → TGA, 78 aa	needs evidence	2231..2467 (+2)117 nt overlap	Short ORF (78 aa); Alternate start GTG; Large overlap before (117 nt)
gene-028	-3.78TTG → TAG, 33 aa	needs evidence	2378..2479 (-3)90 nt overlap	Short ORF (33 aa); Alternate start TTG; Large overlap before (90 nt)
gene-029	+1.3GTG → TAG, 46 aa	needs evidence	2464..2604 (+1)16 nt overlap	Short ORF (46 aa); Alternate start GTG
gene-030	-1.19GTG → TAG, 241 aa	check start	2638..3363 (-1)33 nt gap	Alternate start GTG
gene-031	+3.60GTG → TAG, 31 aa	needs evidence	2649..2744 (+3)715 nt overlap	Short ORF (31 aa); Alternate start GTG; Large overlap before (715 nt)
gene-032	+1.4GTG → TGA, 384 aa	check boundary	2683..3837 (+1)62 nt overlap	Alternate start GTG; Large overlap before (62 nt)
gene-033	+2.31TTG → TGA, 43 aa	needs evidence	2990..3121 (+2)848 nt overlap	Short ORF (43 aa); Alternate start TTG; Large overlap before (848 nt)
gene-034	+2.32GTG → TGA, 49 aa	needs evidence	3335..3484 (+2)213 nt gap	Short ORF (49 aa); Alternate start GTG
gene-035	-2.45TTG → TAG, 41 aa	needs evidence	3420..3545 (-2)65 nt overlap	Short ORF (41 aa); Alternate start TTG; Large overlap before (65 nt)
gene-036	-2.44GTG → TAG, 31 aa	needs evidence	3609..3704 (-2)63 nt gap	Short ORF (31 aa); Alternate start GTG
gene-037	+2.33ATG → TGA, 40 aa	needs evidence	3629..3751 (+2)76 nt overlap	Short ORF (40 aa); Large overlap before (76 nt)
gene-038	-3.77TTG → TGA, 69 aa	needs evidence	3671..3880 (-3)81 nt overlap	Short ORF (69 aa); Alternate start TTG; Large overlap before (81 nt)
gene-039	-2.43TTG → TAG, 644 aa	check boundary	3720..5654 (-2)161 nt overlap	Alternate start TTG; Large overlap before (161 nt)
gene-040	+3.61ATG → TAA, 545 aa	check boundary	3780..5417 (+3)1875 nt overlap	Large overlap before (1875 nt)
gene-041	+2.34GTG → TGA, 95 aa	needs evidence	3938..4225 (+2)1480 nt overlap	Short ORF (95 aa); Alternate start GTG; Large overlap before (1480 nt)
gene-042	+1.5GTG → TGA, 71 aa	needs evidence	4222..4437 (+1)4 nt overlap	Short ORF (71 aa); Alternate start GTG
gene-043	-3.76TTG → TAG, 174 aa	check boundary	4250..4774 (-3)188 nt overlap	Alternate start TTG; Large overlap before (188 nt)
gene-044	+2.35GTG → TGA, 30 aa	needs evidence	4460..4552 (+2)315 nt overlap	Short ORF (30 aa); Alternate start GTG; Large overlap before (315 nt)
gene-045	-3.75TTG → TAA, 38 aa	needs evidence	4787..4903 (-3)234 nt gap	Short ORF (38 aa); Alternate start TTG
gene-046	-3.74TTG → TAG, 111 aa	check start	4907..5242 (-3)3 nt gap	Alternate start TTG
gene-047	+1.6ATG → TGA, 41 aa	needs evidence	4966..5091 (+1)277 nt overlap	Short ORF (41 aa); Large overlap before (277 nt)
gene-048	+1.7GTG → TGA, 86 aa	needs evidence	5227..5487 (+1)135 nt gap	Short ORF (86 aa); Alternate start GTG
gene-049	-3.73GTG → TAG, 34 aa	needs evidence	5333..5437 (-3)155 nt overlap	Short ORF (34 aa); Alternate start GTG; Large overlap before (155 nt)
gene-050	+3.62ATG → TGA, 117 aa	draft ok	5421..5774 (+3)17 nt overlap	none
gene-051	-3.72ATG → TAG, 224 aa	check boundary	5480..6154 (-3)295 nt overlap	Large overlap before (295 nt)
gene-052	+2.36GTG → TAA, 42 aa	needs evidence	5534..5662 (+2)621 nt overlap	Short ORF (42 aa); Alternate start GTG; Large overlap before (621 nt)
gene-053	+2.37ATG → TGA, 126 aa	draft ok	5771..6151 (+2)108 nt gap	none
gene-054	-2.42GTG → TGA, 143 aa	check boundary	5886..6317 (-2)266 nt overlap	Alternate start GTG; Large overlap before (266 nt)
gene-055	-1.18TTG → TGA, 350 aa	check boundary	5995..7047 (-1)323 nt overlap	Alternate start TTG; Large overlap before (323 nt)
gene-056	+1.8ATG → TAA, 144 aa	check boundary	6190..6624 (+1)858 nt overlap	Large overlap before (858 nt)
gene-057	+2.38ATG → TGA, 66 aa	needs evidence	6308..6508 (+2)317 nt overlap	Short ORF (66 aa); Large overlap before (317 nt)
gene-058	+3.63GTG → TAA, 198 aa	check boundary	6411..7007 (+3)98 nt overlap	Alternate start GTG; Large overlap before (98 nt)
gene-059	-2.41GTG → TAG, 42 aa	needs evidence	6441..6569 (-2)567 nt overlap	Short ORF (42 aa); Alternate start GTG; Large overlap before (567 nt)
gene-060	-2.40TTG → TAA, 86 aa	needs evidence	6576..6836 (-2)6 nt gap	Short ORF (86 aa); Alternate start TTG
gene-061	+1.9GTG → TAG, 127 aa	check boundary	6637..7020 (+1)200 nt overlap	Alternate start GTG; Large overlap before (200 nt)
gene-062	-3.71GTG → TGA, 37 aa	needs evidence	6761..6874 (-3)260 nt overlap	Short ORF (37 aa); Alternate start GTG; Large overlap before (260 nt)
gene-063	+2.39GTG → TGA, 44 aa	needs evidence	6866..7000 (+2)9 nt overlap	Short ORF (44 aa); Alternate start GTG
gene-064	-2.39TTG → TAG, 40 aa	needs evidence	6891..7013 (-2)110 nt overlap	Short ORF (40 aa); Alternate start TTG; Large overlap before (110 nt)
gene-065	+2.40ATG → TAA, 106 aa	draft ok	7034..7354 (+2)20 nt gap	none
gene-066	-2.38ATG → TGA, 56 aa	needs evidence	7212..7382 (-2)143 nt overlap	Short ORF (56 aa); Large overlap before (143 nt)
gene-067	-1.17GTG → TAG, 216 aa	check start	7351..8001 (-1)32 nt overlap	Alternate start GTG
gene-068	-3.70TTG → TGA, 51 aa	needs evidence	7364..7519 (-3)638 nt overlap	Short ORF (51 aa); Alternate start TTG; Large overlap before (638 nt)
gene-069	+1.10GTG → TAG, 33 aa	needs evidence	7369..7470 (+1)151 nt overlap	Short ORF (33 aa); Alternate start GTG; Large overlap before (151 nt)
gene-070	+2.41ATG → TGA, 701 aa	draft ok	7586..9691 (+2)115 nt gap	none
gene-071	+1.11GTG → TAA, 62 aa	needs evidence	7675..7863 (+1)2017 nt overlap	Short ORF (62 aa); Alternate start GTG; Large overlap before (2017 nt)
gene-072	+3.64GTG → TGA, 68 aa	needs evidence	7752..7958 (+3)112 nt overlap	Short ORF (68 aa); Alternate start GTG; Large overlap before (112 nt)
gene-073	+3.65GTG → TGA, 42 aa	needs evidence	7992..8120 (+3)33 nt gap	Short ORF (42 aa); Alternate start GTG
gene-074	-1.16GTG → TAG, 34 aa	needs evidence	8062..8166 (-1)59 nt overlap	Short ORF (34 aa); Alternate start GTG
gene-075	-1.15GTG → TGA, 136 aa	check start	8200..8610 (-1)33 nt gap	Alternate start GTG
gene-076	-1.14GTG → TGA, 40 aa	needs evidence	8620..8742 (-1)9 nt gap	Short ORF (40 aa); Alternate start GTG
gene-077	-1.13ATG → TGA, 209 aa	draft ok	8743..9372 (-1)adjacent/first	none
gene-078	-3.69GTG → TGA, 53 aa	needs evidence	9215..9376 (-3)158 nt overlap	Short ORF (53 aa); Alternate start GTG; Large overlap before (158 nt)
gene-079	-1.12TTG → TGA, 57 aa	needs evidence	9373..9546 (-1)4 nt overlap	Short ORF (57 aa); Alternate start TTG
gene-080	-2.37ATG → TGA, 67 aa	needs evidence	9606..9809 (-2)59 nt gap	Short ORF (67 aa)
gene-081	-1.11GTG → TAG, 280 aa	check boundary	9664..10506 (-1)146 nt overlap	Alternate start GTG; Large overlap before (146 nt)
gene-082	+3.66ATG → TGA, 93 aa	needs evidence	9672..9953 (+3)835 nt overlap	Short ORF (93 aa); Large overlap before (835 nt)
gene-083	+1.12GTG → TAA, 319 aa	check boundary	9688..10647 (+1)266 nt overlap	Alternate start GTG; Large overlap before (266 nt)
gene-084	+2.42TTG → TGA, 40 aa	needs evidence	9908..10030 (+2)740 nt overlap	Short ORF (40 aa); Alternate start TTG; Large overlap before (740 nt)
gene-085	+2.43GTG → TGA, 64 aa	needs evidence	10076..10270 (+2)45 nt gap	Short ORF (64 aa); Alternate start GTG
gene-086	+3.67GTG → TAG, 161 aa	check boundary	10086..10571 (+3)185 nt overlap	Alternate start GTG; Large overlap before (185 nt)
gene-087	-2.36GTG → TAG, 61 aa	needs evidence	10149..10334 (-2)423 nt overlap	Short ORF (61 aa); Alternate start GTG; Large overlap before (423 nt)
gene-088	+2.44ATG → TGA, 54 aa	needs evidence	10490..10654 (+2)155 nt gap	Short ORF (54 aa)
gene-089	-3.68TTG → TAA, 55 aa	needs evidence	10568..10735 (-3)87 nt overlap	Short ORF (55 aa); Alternate start TTG; Large overlap before (87 nt)
gene-090	-2.35ATG → TAG, 300 aa	check boundary	10644..11546 (-2)92 nt overlap	Large overlap before (92 nt)
gene-091	+3.68ATG → TGA, 686 aa	check boundary	10647..12707 (+3)900 nt overlap	Large overlap before (900 nt)
gene-092	+2.45GTG → TGA, 42 aa	needs evidence	10820..10948 (+2)1888 nt overlap	Short ORF (42 aa); Alternate start GTG; Large overlap before (1888 nt)
gene-093	-3.67GTG → TGA, 37 aa	needs evidence	10856..10969 (-3)93 nt overlap	Short ORF (37 aa); Alternate start GTG; Large overlap before (93 nt)
gene-094	+1.13ATG → TGA, 116 aa	check boundary	10894..11244 (+1)76 nt overlap	Large overlap before (76 nt)
gene-095	-3.66GTG → TAG, 53 aa	needs evidence	10988..11149 (-3)257 nt overlap	Short ORF (53 aa); Alternate start GTG; Large overlap before (257 nt)
gene-096	+2.46GTG → TGA, 56 aa	needs evidence	11153..11323 (+2)3 nt gap	Short ORF (56 aa); Alternate start GTG
gene-097	-3.65GTG → TAG, 46 aa	needs evidence	11279..11419 (-3)45 nt overlap	Short ORF (46 aa); Alternate start GTG
gene-098	+1.14ATG → TGA, 117 aa	draft ok	11455..11808 (+1)35 nt gap	none
gene-099	+2.47GTG → TAA, 116 aa	check boundary	11507..11857 (+2)302 nt overlap	Alternate start GTG; Large overlap before (302 nt)
gene-100	-3.64GTG → TAG, 71 aa	needs evidence	11585..11800 (-3)273 nt overlap	Short ORF (71 aa); Alternate start GTG; Large overlap before (273 nt)
gene-101	-2.34TTG → TGA, 359 aa	check start	11751..12830 (-2)50 nt overlap	Alternate start TTG
gene-102	-3.63ATG → TGA, 41 aa	needs evidence	11873..11998 (-3)958 nt overlap	Short ORF (41 aa); Large overlap before (958 nt)
gene-103	-3.62GTG → TAG, 49 aa	needs evidence	12116..12265 (-3)117 nt gap	Short ORF (49 aa); Alternate start GTG
gene-104	+2.48GTG → TGA, 49 aa	needs evidence	12152..12301 (+2)114 nt overlap	Short ORF (49 aa); Alternate start GTG; Large overlap before (114 nt)
gene-105	-3.61TTG → TAG, 35 aa	needs evidence	12338..12445 (-3)36 nt gap	Short ORF (35 aa); Alternate start TTG
gene-106	-3.60GTG → TAG, 172 aa	check start	12464..12982 (-3)18 nt gap	Alternate start GTG
gene-107	+2.49GTG → TAG, 50 aa	needs evidence	12545..12697 (+2)438 nt overlap	Short ORF (50 aa); Alternate start GTG; Large overlap before (438 nt)
gene-108	-1.10GTG → TAA, 123 aa	check start	12694..13065 (-1)4 nt overlap	Alternate start GTG
gene-109	+1.15ATG → TGA, 192 aa	check boundary	12709..13287 (+1)357 nt overlap	Large overlap before (357 nt)
gene-110	-2.33TTG → TAG, 39 aa	needs evidence	12903..13022 (-2)385 nt overlap	Short ORF (39 aa); Alternate start TTG; Large overlap before (385 nt)
gene-111	-1.9GTG → TGA, 172 aa	check start	13066..13584 (-1)43 nt gap	Alternate start GTG
gene-112	+3.69GTG → TAG, 40 aa	needs evidence	13101..13223 (+3)484 nt overlap	Short ORF (40 aa); Alternate start GTG; Large overlap before (484 nt)
gene-113	-2.32ATG → TAG, 38 aa	needs evidence	13266..13382 (-2)42 nt gap	Short ORF (38 aa)
gene-114	-3.59TTG → TAG, 137 aa	check boundary	13301..13714 (-3)82 nt overlap	Alternate start TTG; Large overlap before (82 nt)
gene-115	+1.16ATG → TAA, 87 aa	needs evidence	13333..13596 (+1)382 nt overlap	Short ORF (87 aa); Large overlap before (382 nt)
gene-116	-2.31TTG → TAG, 253 aa	check start	13560..14321 (-2)37 nt overlap	Alternate start TTG
gene-117	+3.70ATG → TGA, 230 aa	check boundary	13620..14312 (+3)702 nt overlap	Large overlap before (702 nt)
gene-118	+1.17ATG → TGA, 30 aa	needs evidence	13636..13728 (+1)677 nt overlap	Short ORF (30 aa); Large overlap before (677 nt)
gene-119	-3.58GTG → TGA, 30 aa	needs evidence	13745..13837 (-3)16 nt gap	Short ORF (30 aa); Alternate start GTG
gene-120	+2.50GTG → TGA, 44 aa	needs evidence	14054..14188 (+2)216 nt gap	Short ORF (44 aa); Alternate start GTG
gene-121	-3.57GTG → TGA, 95 aa	needs evidence	14231..14518 (-3)42 nt gap	Short ORF (95 aa); Alternate start GTG
gene-122	+1.18TTG → TGA, 72 aa	needs evidence	14254..14472 (+1)265 nt overlap	Short ORF (72 aa); Alternate start TTG; Large overlap before (265 nt)
gene-123	+2.51GTG → TGA, 88 aa	needs evidence	14279..14545 (+2)194 nt overlap	Short ORF (88 aa); Alternate start GTG; Large overlap before (194 nt)
gene-124	-2.30GTG → TGA, 75 aa	needs evidence	14337..14564 (-2)209 nt overlap	Short ORF (75 aa); Alternate start GTG; Large overlap before (209 nt)
gene-125	+3.71ATG → TGA, 44 aa	needs evidence	14469..14603 (+3)96 nt overlap	Short ORF (44 aa); Large overlap before (96 nt)
gene-126	+1.19ATG → TGA, 74 aa	needs evidence	14542..14766 (+1)62 nt overlap	Short ORF (74 aa); Large overlap before (62 nt)
gene-127	+3.72GTG → TAA, 38 aa	needs evidence	14631..14747 (+3)136 nt overlap	Short ORF (38 aa); Alternate start GTG; Large overlap before (136 nt)
gene-128	-3.56GTG → TGA, 76 aa	needs evidence	14723..14953 (-3)25 nt overlap	Short ORF (76 aa); Alternate start GTG
gene-129	+2.52GTG → TGA, 32 aa	needs evidence	14822..14920 (+2)132 nt overlap	Short ORF (32 aa); Alternate start GTG; Large overlap before (132 nt)
gene-130	-1.8ATG → TGA, 70 aa	needs evidence	14836..15048 (-1)85 nt overlap	Short ORF (70 aa); Large overlap before (85 nt)
gene-131	+3.73GTG → TGA, 38 aa	needs evidence	14862..14978 (+3)187 nt overlap	Short ORF (38 aa); Alternate start GTG; Large overlap before (187 nt)
gene-132	+2.53TTG → TGA, 77 aa	needs evidence	14927..15160 (+2)52 nt overlap	Short ORF (77 aa); Alternate start TTG
gene-133	-2.29GTG → TGA, 172 aa	check boundary	15051..15569 (-2)110 nt overlap	Alternate start GTG; Large overlap before (110 nt)
gene-134	+1.20GTG → TGA, 143 aa	check boundary	15148..15579 (+1)422 nt overlap	Alternate start GTG; Large overlap before (422 nt)
gene-135	-1.7GTG → TGA, 35 aa	needs evidence	15235..15342 (-1)345 nt overlap	Short ORF (35 aa); Alternate start GTG; Large overlap before (345 nt)
gene-136	+2.54GTG → TGA, 57 aa	needs evidence	15515..15688 (+2)172 nt gap	Short ORF (57 aa); Alternate start GTG
gene-137	-3.55GTG → TAG, 92 aa	needs evidence	15536..15814 (-3)153 nt overlap	Short ORF (92 aa); Alternate start GTG; Large overlap before (153 nt)
gene-138	+3.74ATG → TAG, 130 aa	check boundary	15576..15968 (+3)239 nt overlap	Large overlap before (239 nt)
gene-139	+1.21GTG → TGA, 81 aa	needs evidence	15613..15858 (+1)356 nt overlap	Short ORF (81 aa); Alternate start GTG; Large overlap before (356 nt)
gene-140	-2.28ATG → TGA, 76 aa	needs evidence	15639..15869 (-2)220 nt overlap	Short ORF (76 aa); Large overlap before (220 nt)
gene-141	-1.6TTG → TAG, 54 aa	needs evidence	15886..16050 (-1)16 nt gap	Short ORF (54 aa); Alternate start TTG
gene-142	+2.55ATG → TAA, 39 aa	needs evidence	15902..16021 (+2)149 nt overlap	Short ORF (39 aa); Large overlap before (149 nt)
gene-143	+1.22ATG → TAA, 47 aa	needs evidence	15940..16083 (+1)82 nt overlap	Short ORF (47 aa); Large overlap before (82 nt)
gene-144	-3.54TTG → TAG, 63 aa	needs evidence	15965..16156 (-3)119 nt overlap	Short ORF (63 aa); Alternate start TTG; Large overlap before (119 nt)
gene-145	-2.27ATG → TAG, 69 aa	needs evidence	16044..16253 (-2)113 nt overlap	Short ORF (69 aa); Large overlap before (113 nt)
gene-146	+1.23GTG → TGA, 61 aa	needs evidence	16093..16278 (+1)161 nt overlap	Short ORF (61 aa); Alternate start GTG; Large overlap before (161 nt)
gene-147	-1.5GTG → TAG, 30 aa	needs evidence	16219..16311 (-1)60 nt overlap	Short ORF (30 aa); Alternate start GTG
gene-148	-3.53GTG → TAG, 63 aa	needs evidence	16280..16471 (-3)32 nt overlap	Short ORF (63 aa); Alternate start GTG
gene-149	-2.26GTG → TGA, 74 aa	needs evidence	16308..16532 (-2)164 nt overlap	Short ORF (74 aa); Alternate start GTG; Large overlap before (164 nt)
gene-150	-1.4GTG → TGA, 32 aa	needs evidence	16318..16416 (-1)215 nt overlap	Short ORF (32 aa); Alternate start GTG; Large overlap before (215 nt)
gene-151	+1.24GTG → TGA, 128 aa	check start	16378..16764 (+1)39 nt overlap	Alternate start GTG
gene-152	-1.3GTG → TAG, 114 aa	check boundary	16483..16827 (-1)282 nt overlap	Alternate start GTG; Large overlap before (282 nt)
gene-153	-2.25ATG → TGA, 59 aa	needs evidence	16533..16712 (-2)295 nt overlap	Short ORF (59 aa); Large overlap before (295 nt)
gene-154	-3.52GTG → TAA, 217 aa	check boundary	16544..17197 (-3)169 nt overlap	Alternate start GTG; Large overlap before (169 nt)
gene-155	+3.75GTG → TGA, 37 aa	needs evidence	16692..16805 (+3)506 nt overlap	Short ORF (37 aa); Alternate start GTG; Large overlap before (506 nt)
gene-156	+3.76GTG → TGA, 72 aa	needs evidence	16854..17072 (+3)48 nt gap	Short ORF (72 aa); Alternate start GTG
gene-157	-1.2GTG → TAG, 90 aa	needs evidence	16876..17148 (-1)197 nt overlap	Short ORF (90 aa); Alternate start GTG; Large overlap before (197 nt)
gene-158	-2.24GTG → TAG, 54 aa	needs evidence	16890..17054 (-2)259 nt overlap	Short ORF (54 aa); Alternate start GTG; Large overlap before (259 nt)
gene-159	+2.56ATG → TGA, 133 aa	check boundary	16967..17368 (+2)88 nt overlap	Large overlap before (88 nt)
gene-160	-1.1GTG → TAG, 34 aa	needs evidence	17329..17433 (-1)40 nt overlap	Short ORF (34 aa); Alternate start GTG